PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01017.1.g00030.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18275.4 Da    PI: 9.6844
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01017.1.g00030.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-251160251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                    rie+k  rqv fskRr g++KKA+EL  LCdaeva+++fs+ gklyeyss
  Zpz_sc01017.1.g00030.1.sm.mkhc 11 RIEDKASRQVRFSKRRSGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 60
                                    8***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.973262IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-32261IPR002100Transcription factor, MADS-box
CDDcd002652.88E-38377No hitNo description
SuperFamilySSF554555.36E-30481IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-27424IPR002100Transcription factor, MADS-box
PfamPF003194.6E-251158IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-273960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MARRGRVELR RIEDKASRQV RFSKRRSGLF KKAFELALLC DAEVALLVFS PAGKLYEYSS  60
SSIEGTYERY QQFAGAGTNV NAERSNDNQD ETSDLQSKLK EIATWSTEKN IDETSTSELE  120
KLEKLLTNAL RDTKTKKMLA KKSGGCPGAS TSNQSSNEPR RPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-18473271Myocyte-specific enhancer factor 2A
3kov_B4e-18473271Myocyte-specific enhancer factor 2A
3kov_I4e-18473271Myocyte-specific enhancer factor 2A
3kov_J4e-18473271Myocyte-specific enhancer factor 2A
3p57_A4e-18473271Myocyte-specific enhancer factor 2A
3p57_B4e-18473271Myocyte-specific enhancer factor 2A
3p57_C4e-18473271Myocyte-specific enhancer factor 2A
3p57_D4e-18473271Myocyte-specific enhancer factor 2A
3p57_I4e-18473271Myocyte-specific enhancer factor 2A
3p57_J4e-18473271Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971093.13e-85PREDICTED: truncated transcription factor CAULIFLOWER D-like
SwissprotO827432e-34AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A0A9D7Q69e-86A0A0A9D7Q6_ARUDO; Uncharacterized protein
STRINGSb03g044170.15e-83(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-32AGAMOUS-like 19